Motif View

Internal ID 17654135
Source Database TransTermHP TERM 873
Feature Type terminator
Name
Rho-independent transcription terminator TERM 873
Sequence GGGTCGTCCGTCGCGTCCGCCGGGCGCCATGGCCGACCC
Look for more occurrences
Start 4481621
End 4481659
Strand +
Genomic Context Located within gene [PA2G_03998]
Replicon Pseudomonas aeruginosa 2192 supercont1.1 genomic scaffold, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GTACTGAATTCCACC(5' tail) GGGTCGTCCGTCGCGTCC(5' stem) GCC(loop) GGGCGCCATGGCCGACCC(3' stem) TTCATTCGCATCCGG(3' tail). Confidence: 93.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685