Motif View

Internal ID 17654294
Source Database TransTermHP TERM 1131
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1131
Sequence GCCCCACCGGATGGTGGGGC
Look for more occurrences
Start 5504370
End 5504389
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa 2192 supercont1.1 genomic scaffold, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments AGGCGGGCAAAAAAA(5' tail) GCCCCACC(5' stem) ATCC(loop) GGTGGGGC(3' stem) CGAGAGACGAGCGTG(3' tail). Confidence: 100.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685