Motif View

Internal ID 17655313
Source Database TransTermHP TERM 1188
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1188
Sequence GCCCCCGGCCTGGCCGGGGGC
Look for more occurrences
Start 4691612
End 4691632
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa PACS2 chromosome, whole genome shotgun sequence, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GGGCGATGCCGCAAA(5' tail) GCCCCCGGC(5' stem) CAG(loop) GCCGGGGGC(3' stem) GTCGCGCCAGGGAGC(3' tail). Confidence: 100.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685