Motif View

Internal ID 17655490
Source Database TransTermHP TERM 1484
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1484
Sequence GCCCCGGTCACGTCCGGGGC
Look for more occurrences
Start 5856126
End 5856145
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa PACS2 chromosome, whole genome shotgun sequence, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TGCCTGCCCTTTCCC(5' tail) GCCCCGG(5' stem) TCACGT(loop) CCGGGGC(3' stem) TTTTTTATGTCCGGG(3' tail). Confidence: 100.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685