Motif View

Internal ID 17655585
Source Database TransTermHP TERM 1646
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1646
Sequence GGGGAGCATGATGCTCCCC
Look for more occurrences
Start 6344345
End 6344363
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa PACS2 chromosome, whole genome shotgun sequence, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments ATGCCGATAAAAAAA(5' tail) GGGGAGCA(5' stem) TCA(loop) TGCTCCCC(3' stem) CAGGGACTTTAACCG(3' tail). Confidence: 100. opp_overlap 6344358 6344359

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685