Motif View

Internal ID 17655772
Source Database TransTermHP TERM 265
Feature Type terminator
Name
Rho-independent transcription terminator TERM 265
Sequence CCCGGCGATGCCGGG
Look for more occurrences
Start 1043945
End 1043959
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa PAO1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCCAAGAAGAAAAAA(5' tail) CCCGGC(5' stem) GAT(loop) GCCGGG(3' stem) TTTTTTCGTTGCCTG(3' tail). Confidence: 100. opp_overlap 1043945 1043938, overlap 1043937

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685