Motif View

Internal ID 17656657
Source Database TransTermHP TERM 115
Feature Type terminator
Name
Rho-independent transcription terminator TERM 115
Sequence CGAGCGGCCGGCACTCGTGCCGGCCGCCG
Look for more occurrences
Start 518874
End 518902
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa UCBPP-PA14 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCCTGAGCGGCGCGA(5' tail) CGAGCGGCCGGCA(5' stem) CTCG(loop) TGCCGGCCGC-CG(3' stem) TGTTTCAGAACAGCC(3' tail). Confidence: 93. gap 1, overlap 518872

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685