Motif View

Internal ID 17657484
Source Database TransTermHP TERM 1410
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1410
Sequence CCGCCTCCTCAGGAGGCGG
Look for more occurrences
Start 5888896
End 5888914
Strand -
Genomic Context Located within gene [PA14_66100]
Replicon Pseudomonas aeruginosa UCBPP-PA14 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCGACAAAAACGAAA(5' tail) CCGCCTCC(5' stem) TGA(loop) GGAGGCGG(3' stem) TCCGGGTTCATCCGA(3' tail). Confidence: 100. opp_overlap 5888890, overlap 5888891

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685