Motif View

Internal ID 17658972
Source Database TransTermHP TERM 863
Feature Type terminator
Name
Rho-independent transcription terminator TERM 863
Sequence TGCGAGCCGGGGCTTGGTGCCCCGGCTTTCG
Look for more occurrences
Start 3966498
End 3966528
Strand -
Genomic Context
Replicon Pseudomonas syringae pv. tomato str. DC3000 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CATTTTTCAAAAAAA(5' tail) CGAAAGCCGGGGC(5' stem) ACCAA(loop) GCCCCGGCTCGCA(3' stem) TCACACTCGGCAATC(3' tail). Confidence: 100. overlap 3966483 3966482 3966503

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685