Motif View

Internal ID 17659512
Source Database TransTermHP TERM 258
Feature Type terminator
Name
Rho-independent transcription terminator TERM 258
Sequence GGCCTGTCTACCTGGTAGACAGGCC
Look for more occurrences
Start 1039546
End 1039570
Strand -
Genomic Context
Replicon Pseudomonas syringae pv. syringae B728a chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TGTTTAAAAAGGAAA(5' tail) GGCCTGTCTAC(5' stem) CAG(loop) GTAGACAGGCC(3' stem) TTATTTTGTAACTGC(3' tail). Confidence: 100. opp_overlap 1039543 1039546, overlap 1039541

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685