Motif View

Internal ID 17659836
Source Database TransTermHP TERM 723
Feature Type terminator
Name
Rho-independent transcription terminator TERM 723
Sequence CCGGCCTAAGCCGG
Look for more occurrences
Start 2828298
End 2828311
Strand +
Genomic Context Located within gene [Psyr_2442]
Replicon Pseudomonas syringae pv. syringae B728a chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TATTTGCTGCGCAAA(5' tail) CCGGC(5' stem) CTAA(loop) GCCGG(3' stem) TTTTTCATCCTTGTT(3' tail). Confidence: 100. opp_overlap 2828298

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685