Motif View

Internal ID 17660222
Source Database TransTermHP TERM 1305
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1305
Sequence CGGGCTGGCATGTTCCGGCCCG
Look for more occurrences
Start 5554811
End 5554832
Strand -
Genomic Context
Replicon Pseudomonas syringae pv. syringae B728a chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GATGACAATTCAAAA(5' tail) CGGGCCGG(5' stem) AACATG(loop) CCAGCCCG(3' stem) TTCAACGGATCAGGC(3' tail). Confidence: 90. overlap 5554823

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685