Motif View

Internal ID 17660271
Source Database TransTermHP TERM 1390
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1390
Sequence CCCGCTTCGGCGGG
Look for more occurrences
Start 5867263
End 5867276
Strand +
Genomic Context
Replicon Pseudomonas syringae pv. syringae B728a chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TGGTCTTGGTACAAA(5' tail) CCCGC(5' stem) TTCG(loop) GCGGG(3' stem) TTTTTTATTGCCTGC(3' tail). Confidence: 100. opp_overlap 5867263

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685