Motif View

Internal ID 17660392
Source Database TransTermHP TERM 128
Feature Type terminator
Name
Rho-independent transcription terminator TERM 128
Sequence TGGCCGCTTCGAAAGCGGCCA
Look for more occurrences
Start 617874
End 617894
Strand +
Genomic Context
Replicon Pseudomonas syringae pv. phaseolicola 1448A chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CAGTAAGATAAAAAA(5' tail) TGGCCGCTT(5' stem) CGA(loop) AAGCGGCCA(3' stem) TTCTTTTAGTGAAAG(3' tail). Confidence: 100. opp_overlap 617867 617874, overlap 617871

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685