Motif View

Internal ID 17660740
Source Database TransTermHP TERM 649
Feature Type terminator
Name
Rho-independent transcription terminator TERM 649
Sequence GCCCCGTGATCGCTCACGGGGC
Look for more occurrences
Start 2629677
End 2629698
Strand -
Genomic Context
Replicon Pseudomonas syringae pv. phaseolicola 1448A chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments AGCGCTAAACAAAAA(5' tail) GCCCCGTGA(5' stem) GCGA(loop) TCACGGGGC(3' stem) TTTTTGTTATCTGGG(3' tail). Confidence: 100. opp_overlap 2629677

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685