Motif View

Internal ID 17661497
Source Database TransTermHP TERM 410
Feature Type terminator
Name
Rho-independent transcription terminator TERM 410
Sequence GCGGCCGGCGCAGGACCTGCGCCGGCCGAC
Look for more occurrences
Start 1528224
End 1528253
Strand -
Genomic Context
Replicon Pseudomonas protegens Pf-5 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GGGATTACAGAAGGA(5' tail) GTCGGCCGGCGCAG(5' stem) GTC(loop) CTGCGCCGGCCG-C(3' stem) TGGCAGGCTCAGAGC(3' tail). Confidence: 100. gap 1, overlap 1528221

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685