Motif View

Internal ID 17662404
Source Database TransTermHP TERM 121
Feature Type terminator
Name
Rho-independent transcription terminator TERM 121
Sequence GAACGCCGACCCTTGGGTCGGCGTTC
Look for more occurrences
Start 544185
End 544210
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa PA7 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TTCCGCGCCATGCAA(5' tail) GAACGCCGACC(5' stem) CTTG(loop) GGTCGGCGTTC(3' stem) TTTTATCCCTCGCGG(3' tail). Confidence: 100. opp_overlap 544185 544188

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685