Motif View

Internal ID 17662406
Source Database TransTermHP TERM 128
Feature Type terminator
Name
Rho-independent transcription terminator TERM 128
Sequence CCCGGATGGAAACATCCGGG
Look for more occurrences
Start 579837
End 579856
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa PA7 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCCCAGCCCGAAGAA(5' tail) CCCGGATG(5' stem) GAAA(loop) CATCCGGG(3' stem) TTTTTTATTGCCCGC(3' tail). Confidence: 100. opp_overlap 579812 579837

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685