Motif View

Internal ID 17662476
Source Database TransTermHP TERM 258
Feature Type terminator
Name
Rho-independent transcription terminator TERM 258
Sequence GAGAGCCCTCCGCCGGAGGGCTTC
Look for more occurrences
Start 1181091
End 1181114
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa PA7 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCGGCGCCCTTTTCC(5' tail) GAGAGCCCTCC(5' stem) GCC(loop) GGAGGGCT-TC(3' stem) TTTTTATCCGCTGTG(3' tail). Confidence: 100. gap 1, overlap 1181095

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685