Motif View

Internal ID 17662900
Source Database TransTermHP TERM 962
Feature Type terminator
Name
Rho-independent transcription terminator TERM 962
Sequence GGCCGCTTCCGCGGCC
Look for more occurrences
Start 4519340
End 4519355
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa PA7 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CGCACCAGCGAAAGA(5' tail) GGCCGC(5' stem) TTCC(loop) GCGGCC(3' stem) TTTTTCATTTCCACC(3' tail). Confidence: 100. opp_overlap 4519340 4519338, overlap 4519334 4519333

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685