Motif View

Internal ID 17666300
Source Database TransTermHP TERM 987
Feature Type terminator
Name
Rho-independent transcription terminator TERM 987
Sequence GCCCCGCGTATCATTCGGTCGCGGGGC
Look for more occurrences
Start 3046944
End 3046970
Strand -
Genomic Context Located within gene [Pfl01_2656]
Replicon Pseudomonas fluorescens Pf0-1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GACAGGCGCAAAAAA(5' tail) GCCCCGCG-ACC(5' stem) GAAT(loop) GATACGCGGGGC(3' stem) AAAAAATTTGGTTGG(3' tail). Confidence: 100. gap 1

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685