Motif View

Internal ID 17666314
Source Database TransTermHP TERM 1005
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1005
Sequence GCACCCGCGAAGGTGC
Look for more occurrences
Start 3125602
End 3125617
Strand -
Genomic Context
Replicon Pseudomonas fluorescens Pf0-1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCAGGCACAAAAAAA(5' tail) GCACC(5' stem) TTCGCG(loop) GGTGC(3' stem) TTTTTTTGTGGTCGG(3' tail). Confidence: 100. opp_overlap 3125581 3125602

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685