Motif View

Internal ID 17666583
Source Database TransTermHP TERM 1349
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1349
Sequence CGCCCCGACCAGAGTCGGGGCG
Look for more occurrences
Start 4367001
End 4367022
Strand +
Genomic Context
Replicon Pseudomonas fluorescens Pf0-1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCGCACAAACAAAAA(5' tail) CGCCCCGAC(5' stem) CAGA(loop) GTCGGGGCG(3' stem) TTTTCATTTGCAGCT(3' tail). Confidence: 100. opp_overlap 4366995 4367001, overlap 4366996

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685