Motif View

Internal ID 17666804
Source Database TransTermHP TERM 1623
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1623
Sequence CCCTGGCCGAAGCCAGGG
Look for more occurrences
Start 5185788
End 5185805
Strand +
Genomic Context
Replicon Pseudomonas fluorescens Pf0-1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCACAAACAAAAAAA(5' tail) CCCTGGC(5' stem) CGAA(loop) GCCAGGG(3' stem) TTTTTCATTGCATCA(3' tail). Confidence: 100. opp_overlap 5185788

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685