Motif View

Internal ID 17667980
Source Database TransTermHP TERM 72
Feature Type terminator
Name
Rho-independent transcription terminator TERM 72
Sequence CCCCTACCTGCATGTGCAGATAGGGG
Look for more occurrences
Start 194231
End 194256
Strand -
Genomic Context
Replicon Pseudomonas putida GB-1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments ATTCATTTCGCAAAA(5' tail) CCCCTATCTGC(5' stem) ACAT(loop) GCAGGTAGGGG(3' stem) TTTTGTCTTTAAGTA(3' tail). Confidence: 95. opp_overlap 194231 194226 194225

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685