Motif View

Internal ID 17668036
Source Database TransTermHP TERM 161
Feature Type terminator
Name
Rho-independent transcription terminator TERM 161
Sequence GGCCGCTCCTACAGGGGACCGCGTAACCCCTGTAGGAGCGGCC
Look for more occurrences
Start 450795
End 450837
Strand -
Genomic Context
Replicon Pseudomonas putida GB-1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCCATCGCGACACAA(5' tail) GGCCGCTCCTACAGGGG(5' stem) TTACGCGGT(loop) CCCCTGTAGGAGCGGCC(3' stem) TTGTGTCGCGATGGG(3' tail). Confidence: 100. opp_overlap 450795

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685