Motif View

Internal ID 17668295
Source Database TransTermHP TERM 609
Feature Type terminator
Name
Rho-independent transcription terminator TERM 609
Sequence CCCCGCCAAGGTTTGCCTTGGCGGGG
Look for more occurrences
Start 2015785
End 2015810
Strand +
Genomic Context
Replicon Pseudomonas putida GB-1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCGGTTGTACGCGCG(5' tail) CCCCGCCAAGG(5' stem) TTTG(loop) CCTTGGCGGGG(3' stem) TTTGTTTTTTCAGCC(3' tail). Confidence: 100.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685