Motif View

Internal ID 17668535
Source Database TransTermHP TERM 1036
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1036
Sequence GCCCGCTCAATCGAGCGGGC
Look for more occurrences
Start 4422392
End 4422411
Strand -
Genomic Context
Replicon Pseudomonas putida GB-1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCAGAAAAACAAAAA(5' tail) GCCCGCTC(5' stem) GATT(loop) GAGCGGGC(3' stem) TTCTTGATGGGATAT(3' tail). Confidence: 100. opp_overlap 4422392, overlap 4422386

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685