| Internal ID | 17668538 | Source Database | TransTermHP TERM 1040 |
| Feature Type | terminator |
| Name |
Rho-independent transcription terminator TERM 1040
|
| Sequence |
TTTGAGATGAAGGGGCCGGTGGTCTAGTCACCGGCCTCTTCATGTTGGA Look for more occurrences |
| Start | 4424852 |
| End | 4424900 |
| Strand | - |
| Genomic Context | Located within gene alaS |
| Replicon | Pseudomonas putida GB-1 chromosome, complete genome. |
| Evidence |
ECO:0000246
computational combinatorial evidence used in automatic assertion
|
| Additional Comments | GGCCCCAAAAAACAA(5' tail) TCCAACATGAAGAGGCCGGTGAC(5' stem) TAG(loop) ACCACCGGCCCCTTCATCTCAAA(3' stem) GTCCCTGCTCTGCGA(3' tail). Confidence: 100. opp_overlap 4424863, overlap 4424849 4424857 4424859 |
|
Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685
|