Motif View

Internal ID 17669817
Source Database TransTermHP TERM 1365
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1365
Sequence CCCCGCTTCGGCGGGG
Look for more occurrences
Start 6265658
End 6265673
Strand -
Genomic Context
Replicon Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCAGGCAAAAGAAAA(5' tail) CCCCGC(5' stem) CGAA(loop) GCGGGG(3' stem) CTTTGCAGACTGTTT(3' tail). Confidence: 100. opp_overlap 6265658 6265657

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685