Motif View

Internal ID 17669819
Source Database TransTermHP TERM 1367
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1367
Sequence GCCGCTGCTCCCGAAGGAGCAGCGGC
Look for more occurrences
Start 6271336
End 6271361
Strand +
Genomic Context
Replicon Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GGCGGACATGAAAAA(5' tail) GCCGCTGCTCC(5' stem) CGAA(loop) GGAGCAGCGGC(3' stem) TTTTGGAAGAACCGC(3' tail). Confidence: 100. opp_overlap 6271336

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685