Motif View

Internal ID 17670236
Source Database TransTermHP TERM 509
Feature Type terminator
Name
Rho-independent transcription terminator TERM 509
Sequence GCCCGCATCATGCGGGC
Look for more occurrences
Start 1620605
End 1620621
Strand +
Genomic Context
Replicon Pseudomonas fulva 12-X chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCCAGCCATGAAAAA(5' tail) GCCCGCA(5' stem) TCA(loop) TGCGGGC(3' stem) TTTTTCATGGGATTC(3' tail). Confidence: 100. opp_overlap 1620605 1620588, overlap 1620588

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685