Motif View

Internal ID 17671007
Source Database TransTermHP TERM 168
Feature Type terminator
Name
Rho-independent transcription terminator TERM 168
Sequence CCCCGCCCATTTGGGTGGGG
Look for more occurrences
Start 696857
End 696876
Strand -
Genomic Context
Replicon Pseudomonas mendocina NK-01 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CAGGCGAAAAAAAAA(5' tail) CCCCACCC(5' stem) AAAT(loop) GGGCGGGG(3' stem) TTGAGGATGCGAGCG(3' tail). Confidence: 100.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685