Motif View

Internal ID 17671370
Source Database TransTermHP TERM 712
Feature Type terminator
Name
Rho-independent transcription terminator TERM 712
Sequence CGCCGCGATCATGCAAGACGATCGCGGCG
Look for more occurrences
Start 2643629
End 2643657
Strand -
Genomic Context
Replicon Pseudomonas mendocina NK-01 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCTCAGTTGAAAAAA(5' tail) CGCCGCGATCGT(5' stem) CTTGC(loop) ATGATCGCGGCG(3' stem) TTTTCATTTATTCGC(3' tail). Confidence: 100. opp_overlap 2643629 2643624

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685