Motif View

Internal ID 17672100
Source Database TransTermHP TERM 339
Feature Type terminator
Name
Rho-independent transcription terminator TERM 339
Sequence CATGGCCCGTGGCCTGTTTTTTCAGGCCACGGGCCATA
Look for more occurrences
Start 1434487
End 1434524
Strand +
Genomic Context
Replicon Pseudomonas fluorescens F113 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TGTTGCCTGATGAAC(5' tail) CATGGCCCGTGGCCTG(5' stem) TTTTTT(loop) CAGGCCACGGGCCATA(3' stem) TTTCGTTATAGGTAC(3' tail). Confidence: 100. opp_overlap 1434486 1434489, overlap 1434487 1434489 1434490

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685