Motif View

Internal ID 17672106
Source Database TransTermHP TERM 349
Feature Type terminator
Name
Rho-independent transcription terminator TERM 349
Sequence CGGCCTTCGGGCCG
Look for more occurrences
Start 1467745
End 1467758
Strand -
Genomic Context
Replicon Pseudomonas fluorescens F113 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TTACCTCAAAAAAAA(5' tail) CGGCC(5' stem) CGAA(loop) GGCCG(3' stem) TTTTTTTATTGCTGC(3' tail). Confidence: 100. opp_overlap 1467737 1467745

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685