Motif View

Internal ID 17672129
Source Database TransTermHP TERM 378
Feature Type terminator
Name
Rho-independent transcription terminator TERM 378
Sequence GCCCACCGAAAGGTGGGC
Look for more occurrences
Start 1572494
End 1572511
Strand -
Genomic Context
Replicon Pseudomonas fluorescens F113 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCACACAAACAAAAA(5' tail) GCCCACC(5' stem) TTTC(loop) GGTGGGC(3' stem) TTCATGTTCAGCATT(3' tail). Confidence: 100. opp_overlap 1572494, overlap 1572488

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685