Motif View

Internal ID 17672306
Source Database TransTermHP TERM 616
Feature Type terminator
Name
Rho-independent transcription terminator TERM 616
Sequence TGCCCGGGCCTTGAAGTCCGGGCA
Look for more occurrences
Start 3051963
End 3051986
Strand +
Genomic Context
Replicon Pseudomonas fluorescens F113 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments ATCCAGAAAACAAAA(5' tail) TGCCCGGGC(5' stem) CTTGAA(loop) GTCCGGGCA(3' stem) TTTTTTTGGACATCA(3' tail). Confidence: 100. opp_overlap 3051963 3051958

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685