Motif View

Internal ID 17673882
Source Database TransTermHP TERM 23
Feature Type terminator
Name
Rho-independent transcription terminator TERM 23
Sequence GCCCCGACCTGTCGGGGC
Look for more occurrences
Start 105713
End 105730
Strand +
Genomic Context
Replicon Pseudomonas putida S16 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GGAGCTGAACAAAAA(5' tail) GCCCCGA(5' stem) CCTG(loop) TCGGGGC(3' stem) TTTTTGTTGCCTGTG(3' tail). Confidence: 100. opp_overlap 105713, overlap 105707

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685