Motif View

Internal ID 17673904
Source Database TransTermHP TERM 60
Feature Type terminator
Name
Rho-independent transcription terminator TERM 60
Sequence CCGCCCGGGCAATGCCCGGGCGG
Look for more occurrences
Start 238088
End 238110
Strand +
Genomic Context
Replicon Pseudomonas putida S16 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCCCCAGTAAGAAAA(5' tail) CCGCCCGGGC(5' stem) AAT(loop) GCCCGGGCGG(3' stem) TTTTTTTTCGCCTGG(3' tail). Confidence: 100. opp_overlap 238088 238083

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685