Motif View

Internal ID 17674098
Source Database TransTermHP TERM 371
Feature Type terminator
Name
Rho-independent transcription terminator TERM 371
Sequence GAGGGCACGGGCTTCGTGCCCTC
Look for more occurrences
Start 1231349
End 1231371
Strand -
Genomic Context
Replicon Pseudomonas putida S16 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCCCAAATGCTAAAA(5' tail) GAGGGCACGA(5' stem) AGC(loop) CCGTGCCCTC(3' stem) CAGCGCGGCGCCTGC(3' tail). Confidence: 100. overlap 1231360

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685