Motif View

Internal ID 17674380
Source Database TransTermHP TERM 856
Feature Type terminator
Name
Rho-independent transcription terminator TERM 856
Sequence GCCCCGCAGGCCTTGGTCCGCGGGGC
Look for more occurrences
Start 3244260
End 3244285
Strand +
Genomic Context
Replicon Pseudomonas putida S16 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CTCCCCCAACCGTTT(5' tail) GCCCCGCAGGC(5' stem) CTTG(loop) GTCCGCGGGGC(3' stem) TTTTTTATGCTGATT(3' tail). Confidence: 100.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685