Motif View

Internal ID 17674690
Source Database TransTermHP TERM 1380
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1380
Sequence GGGCCGCTCTGCGGCCC
Look for more occurrences
Start 5086942
End 5086958
Strand -
Genomic Context
Replicon Pseudomonas putida S16 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCTTGTATCGCGAAA(5' tail) GGGCCGC(5' stem) AGA(loop) GCGGCCC(3' stem) CAGGACTCCAGCAGT(3' tail). Confidence: 90.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685