Motif View

Internal ID 17675226
Source Database TransTermHP TERM 530
Feature Type terminator
Name
Rho-independent transcription terminator TERM 530
Sequence GCCCGCCAATTTGGCGGGC
Look for more occurrences
Start 2247364
End 2247382
Strand -
Genomic Context
Replicon Pseudomonas putida BIRD-1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CGTGAAGAAAAAAAA(5' tail) GCCCGCCA(5' stem) AAT(loop) TGGCGGGC(3' stem) GACAAGGGCGCAGGG(3' tail). Confidence: 100.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685