Motif View

Internal ID 17676386
Source Database TransTermHP TERM 1252
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1252
Sequence GCCCGGCTCGATGCCGGGC
Look for more occurrences
Start 5225037
End 5225055
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa M18 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CTCGGCAATAAGAAA(5' tail) GCCCGGC(5' stem) ATCGA(loop) GCCGGGC(3' stem) TTTTCTCGCACCTTG(3' tail). Confidence: 100. opp_overlap 5225037, overlap 5225013

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685