Motif View

Internal ID 17676662
Source Database TransTermHP TERM 123
Feature Type terminator
Name
Rho-independent transcription terminator TERM 123
Sequence GCCCCGCGATGCGGGGC
Look for more occurrences
Start 562778
End 562794
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa DK2 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CGCCTGAGACGGAAA(5' tail) GCCCCGC(5' stem) GAT(loop) GCGGGGC(3' stem) TTTTTTCTGGGCGCC(3' tail). Confidence: 100. opp_overlap 562778

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685