Motif View

Internal ID 17678219
Source Database TransTermHP TERM 998
Feature Type terminator
Name
Rho-independent transcription terminator TERM 998
Sequence GGGGTGTTCGCGCAAGCGGCACCCC
Look for more occurrences
Start 4437981
End 4438005
Strand +
Genomic Context
Replicon Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GGTGATCGTTGAGGT(5' tail) GGGGTGTTCGC(5' stem) GCAA(loop) GCGG-CACCCC(3' stem) TTTTTCTTTGGTTCT(3' tail). Confidence: 100. gap 1

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685