Motif View

Internal ID 17678823
Source Database TransTermHP TERM 954
Feature Type terminator
Name
Rho-independent transcription terminator TERM 954
Sequence CGCCCGCATCTGCGGGCG
Look for more occurrences
Start 4376449
End 4376466
Strand +
Genomic Context
Replicon Pseudomonas stutzeri DSM 4166 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TGCTGTAATTGAAAA(5' tail) CGCCCGC(5' stem) ATCT(loop) GCGGGCG(3' stem) TTTTCGTGTGCGGCT(3' tail). Confidence: 100. opp_overlap 4376449, overlap 4376435

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685