Motif View

Internal ID 17678902
Source Database TransTermHP TERM 45
Feature Type terminator
Name
Rho-independent transcription terminator TERM 45
Sequence ACCCCGGCCACATTCCTGTGGCCGGGGG
Look for more occurrences
Start 209149
End 209176
Strand +
Genomic Context
Replicon Pseudomonas stutzeri CCUG 29243 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCGATCAAAAAAGAA(5' tail) ACCCCGGCCACA(5' stem) TTCC(loop) TGTGGCCGGGGG(3' stem) TTTTCTTTGCAGCGA(3' tail). Confidence: 100. opp_overlap 209146 209150, overlap 209150

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685