Motif View

Internal ID 17679060
Source Database TransTermHP TERM 303
Feature Type terminator
Name
Rho-independent transcription terminator TERM 303
Sequence GCCGGAAGCTGGCAGCGGGAGCGGGGAGAAATCCTGGCTTCGGCTTCCAGCTTCCGGC
Look for more occurrences
Start 1251787
End 1251844
Strand +
Genomic Context
Replicon Pseudomonas stutzeri CCUG 29243 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CTCAGCTAGACAGGC(5' tail) GCCGGAAGCTGGCAGCGGGAGCGGGGA(5' stem) GAAA(loop) TCCTGGCTTCGGCTTCCAGCTTCCGGC(3' stem) TTTCAGCTTCAGGCT(3' tail). Confidence: 100. opp_overlap 1251784

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685